Northern Ireland had been relatively peaceful during these years, a refuge for Presbyterians during the suppression of the Covenanters in Scotland, but the persecution of Presbyterians in Ireland was increasing around the time Makemie was ordained. In 1681, the year before he was ordained, five ministers of the presbytery that would ordain him had been arrested and fined for gathering together for a fast that they had appointed.
In the midst of these harsh conditions, this presbytery received requests for ministers for the colonies in the American colonies, such as Maryland and Virginia. They sent the newly-ordained Francis Makemie in 1683 to minister to the colonists. At that time Maryland did not have an established church. It was initially set up to allow for Roman Catholics to have toleration there, but the toleration also applied to Presbyterians. Rev. Makemie got to work organizing churches, beginning in Maryland on the eastern shore of the Chesapeake Bay. Like Paul and Barnabas of old, he preached, gathered the saints, and oversaw the election of elders in every church. He also got married and worked as a merchant to both support his family and help raise funds for church planting. He ministered in Maryland, Virginia, North Carolina, and, for much of 1692-1698, on the island of Barbados.
Barbados, one of the southernmost Caribbean islands, was an English colony. Some Presbyterian Covenanters had been sent there in bondage amid the wars, uprisings, and persecutions of the 1650s-1680s, while other Presbyterians had settled there voluntarily. While he was there, Makemie wrote a booklet, available online here, entitled, Truths in a True Light, or, A Pastoral Letter to the Reformed Protestants in Barbados Vindicating the Non Conformists, from the Misrepresentations, Commonly Made of Them in that Island, and in Other Places: And, Demonstrating, That They are Indeed the Truest and Soundest Part of the Church of England. In it, he wrote to the leaders of the Church of England,
Let me humbly and earnestly, with all Submission address the conformable Clergy, in this island, to instruct their People, that they and we profess the same Christian and Protestant Religion, only with some alterations in external Ceremonies and circumstances; that we may unite in affection and strength, against the common Enemy of our Reformation, and concur in the great work of the Gospel, for the manifestation of God’s Glory, and the Conviction, Conversion and Salvation of Souls in this Island, instructing such as are Ignorant, in the principle & great things of Religion, promoting virtue and true holiness, and Preaching down and reproving all Atheism, irreligion, and profanity, sealing and confirming all by a universal Copy, pattern and example, of a holy, and Ministerial Life and Conversation.
After his return to Maryland and Virginia, he also came into conflict with Quakers. Makemie was not so like-minded with the Quakers and he engaged in debate with their doctrine. He wrote a catechism that critiqued their teachings and he published a response to their objection to his catechism. Makemie was friends with the Mathers in Boston, he sought to get ministers for the churches he was planting both from England and from New England. He worked tirelessly and traveled much. On one of those trips he ran into trouble.
When Makemie arrived in New York in 1707, he stepped into a sensitive situation. There was a new governor in town. When Lord Cornbury had become governor in 1702, he had wanted to firmly establish the Church of England in New York. This was not easy, since there were many Dutch settlers there already and Presbyterians from New England. He had found that the Presbyterians had a church building in Jamaica (the neighborhood in Queens, not the island) that had been funded with tax money. Initially the building had been shared by the Presbyterians, Anglicans, and Dutch Reformed, but as the other groups formed their own churches, the Presbyterians, the largest group, retained the building. When the new governor found out about this, he locked the Presbyterian minister out and took the church and manse away from them. In time, the church was able to take the matter to court and they got their building back.
Thus Lord Cornbury had his eye out for Presbyterian activity in New York. When Francis Makemie came into town, he was arrested for preaching in a private house because he had preached without getting a license from the governor of New York. He was put into prison along with a friend of his who had preached in a different church in town. A few weeks later, his trial was held, at which he produced his license from Barbados. He had obtained licenses to preach, although not from New York in particular. He appealed to the Toleration Act of 1689 and argued that these rights were retained throughout the colonies.
The governor described Makemie as a "Jack of all Trades he is a Preacher, a Doctor Physick, a Merchant, an Attorney, or Counsellor at Law, and, which is worse of all, a Disturber of Governments." Makemie contested the last phrase, arguing that he had not done anything to disturb governments. He printed his sermon, which was on Psalm 50:23b, "to him that ordereth his conversation aright will I shew the salvation of God." He said he would preach if even he did not have a license, but that he was law-abiding and licensed, and that his doctrine, expressed in the Westminster Confession of Faith, was in agreement with the 39 Articles of the Church of England, with those exceptions specified in the law.
Makemie won his case, an important one that helped to ensure that religious toleration would be extended to the colonies. All the non-conformists, whether they were Presbyterians or Baptists or Independents, appreciated his stand. Nevertheless, Makemie did suffer since he was forced to pay all the legal expenses. loaded up with all the legal fees. On the other hand, Lord Cornbury was recalled the following year in 1708.
The year before this trial, in 1706, Francis Makemie had organized the first presbytery in America. There had been Presbyterian churches established in the 1600s, but they had not been connected with each other through regional presbyteries until this time. At that first meeting, seven ministers attended. Most of them were Scottish or Scots-Irish, but one was from Massachusetts, a graduate of Harvard under Increase Mather. Makemie mentioned this presbytery meeting in a letter, saying,
Our design is to meet yearly, and oftener, if necessary, to consult the most proper measures, for advancing religion, and propagating Christianity, in our Various Stations, and to mentain Such a Correspondence as may conduce to the improvement of our Ministeriall ability by prescribing Texts to be preached on by two of our number at every meeting, which performance is Subjected to the censure of our Brethren…
They wanted to coordinate their efforts for the spread of Christianity as well as help each other improve. It was a common practice for presbytery meetings to include "presbyterial exercises," in which a couple of them would preach and get feedback from the rest. The next presbytery meeting included ruling elders as well as ministers. From that point forward, it would be expected that all ministers were to attend and that each church was to send a ruling elder. A decade later in 1716, four presbyteries were formed with a synod over them. This expansion happened just in time, since the great migration of the Scots-Irish to America would begin in 1717.
As for Francis Makemie, he died at home in Virginia on the eastern shore of the Chesapeake Bay in 1708. He was about 50 years old. You can read more about him and by him online at the Log College Press: Francis Makemie (1658-1708). You can hear more about the history of American Presbyterianism from this lesson series of mine: American Presbyterian History.